I'm trying to update this a little more few and far between. So as not to be spammy. So I might take a while to post but when I do it will be a bigger list of stuff.
Tonberry Hash Errors:
bcsaka_1 or bcsaka1a : Tonberry hashing error : flag animation is old texture
bgroad_4 : Tonberry hashing error: bushes on bottom are old texture
bcport_2 or bcport2a : Tonberry hashing error : lower right; ramp thingy on the left are old texture
bdin4 : Tonberry hashing error : some of the rocks on left and right are old texture
bvcar_1 : Tonberry hashing error : chairs are old texture
dosea_2 : Tonberry hashing error : doors to sub are old texture
doani1_1 : Tonberry hashing error : floor appears to be old texture
doani2_1 : Tonberry hashing error : lift appears to be old texture
cardsmat_13 : Tonberry hashing error : all cards and cardsmat_1 load fine but cardsmat_13 is old texture (triple triad hd "tripod" related)
doopen_2, doopen2a : Tonberry hashing error : fountain flickers back and forth from old textures to new
Project Eden Glitches:
bghall_3 or bghall3a: Project Eden glitch : black borders around water
bghall_4 or bghall4a : Project Eden glitch : wrong elevator layers
bgroad_4 : Project Eden glitch : white border around tree leaves
cdfield1 : Project Eden glitch : white borders around leaves (bottom right corner), white horizontal line (top left quadrant)
bgroom_2 : Project Eden glitch : 2 white lines on light when lit up
bgmon_1 : Project Eden glitch : weird squares over lights. (already been reported but now it's on list)
bgmon_2 : Project Eden glitch : another weird box by a red light
bgpaty_1 : Project Eden glitch : box around a background light
doan1_2 : Project Eden glitch : random boxes from antenna lights
domt1_1 : Project Eden glitch : streetlight poles are missing; lines over moon
glstaup4 : Project Eden glitch : flashing lights and some block appears on fountain (pretty minor honestly)
bccent12 : Project Eden glitch : blue box over bus stop (minor)
domin2_1 : Project Eden glitch : more "light boxes" around the painting
ebroad41 : Project Eden glitch : lines cutting into the textures
gggate1 : Project Eden glitch : more "light boxes" in left and right lightposts (minor)
gghall1 : Project Eden glitch : "light boxes" in the light shaft
ggroom1 : Project Eden glitch : "light box" by the lamp on left
glclub2 : Project Eden glitch : weird floating blue thing left of flowers

(minor)
glrent1 : Project Eden glitch : "light boxes" by the sign/lower right
glstaup1 : Project Eden glitch : odd lighting artifact under light post on left
glstaup3 : Project Eden glitch : small white line by upper left flag (minor)
glwitch1 or 3 : Project Eden glitch : "light box" on left side (during scene with rinoa/edea)
gnroad5? (not sure) : Project Eden glitch : white lines on rope on bridge (in tomb of unknown king)
tihtl1 : Project eden glitch : "light boxes" on left side above model trains (minor)
bg2f3 or bg2f_31 : Project Eden glitch : light boxes; small white line above emergency hatch
bgbook_3 or bgbook3a : Project Eden glitch : white line above chair in background; edge of desk in foreground has green on edges(from carpet); small lightbox on glass partition
bgmast_4 : Project Eden glitch : light boxes on right and left; small white line by elavator
bgmd1_1 : Project Eden glitch : Black lines around the bars
bgmd2_1 : Project Eden glitch : small white line around top of ladder (hard to see)
fhbrdg1 : Project Eden glitch : white lines around windmills and rails
fhdeck1,2,6 : Project Eden glitch : some of the rails are very degraded in quality
fhhtl1 : Project Eden glitch : light boxes middle of screen and to the right over pc monitor
fhmin1 : Project Eden glitch : light box to right of screen (hard to notice)
fhwater1 : Project Eden glitch : white lines on train tracks in background
fhwise14 : Project Eden glitch : lines around center lights; weird anomaly on left side between the "disk shaped thingys"

gfelone4 : Project Eden glitch : odd light box lines by the left and right windows
gfmin2a : Project Eden glitch : lines in flowers in foreground
gfrich1a : Project Eden glitch : black lines under flowers in center of screen
gmhouse1 : Project Eden glitch : light boxes over pipes in background
gmmoni1? (the missile monitor in base): Project Eden glitch : various anomalys/black backgrounds behind menu choices
gmshoot1 : Project Eden glitch : small white line by missile pod on left side above red light
gmtika3 : Project Eden glitch : light boxes under catwalk
gparm1 : Project Eden glitch : small white line off center left side. (hard to see)
gpcell1 : Project Eden glitch : small blue thingy on hinge on door on the right (very minor; hard to see)
gpescap1 : Project Eden glitch : block of texture missing after the sand bursts through the door
tmelder1 : Project Eden glitch : various light boxes
tmele1 : Project Eden glitch : white line on bottom and right of elevator window
tmhtr1 : Project Eden glitch : light boxes; small white lines left of the bed on the right and under the bed on the left
Unknown errors: (not sure where to put these)
gwpool2 : ???? : black dots in grid pattern over screen
During battle the "dust" when a character moves has a blue box on it. (very minor hard to notice)
(For convenience I named the titles on photobucket to the field names)
screenshots:
http://s34.photobucket.com/user/ethan_wilson1991/slideshow/ff8 project eden